Genetics and genomics of immunity and infectious disease

  • Bailey Lab

    February 2020

  • SeekDeep

    Accurate single base de novo clustering of complex amplicon mixtures.

  • PhD Defense

    Yasin Kaymaz presenting his dissertation in July 2017

Our laboratory studies infectious disease genetics and genomics--from direct effects of infection to pathogen-associated cancer. Our work traverses the fields of genomics, genetics, immunology, epidemiology, molecular evolution, and bioinformatics. For this work, we leverage and develop both experimental and computational tools with the ulitmate goals of improving clinical care and public health.

Tuesday, June 23, 2020

Open Postdoctoral Position in Our Lab

 The lab has an open position for a postdoctoral fellow in    computational biology, genomics and /or bioinformatics focused on work related to our on going malaria projects. 

These NIH projects include:
  1. strain specific immunity in falciparum malaria
  2. genetics and genomics of response and protection for the RTSS malaria vaccine.
  3. evolution, population genetics, and  modeling of antimalarial drug resistance

For more information and to apply:   http://apply.interfolio.com/76324.
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Thursday, February 27, 2020

Heterozygome manuscript out on Bio archives




Our work making rainbows with the Greenhouse lab--demonstrating the utility of diverse microhaplotypes from amplicons for more powerfully addressing questions in malaria gen-epi (e.g.determinging transmission, population differentiation and complexity of infection). Kudos to Sofonias and Nick.



(link to manuscripthttps://connect.biorxiv.org/qr/2020.02.25.964536
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Saturday, February 1, 2020

SeekDeep JID Cover

Congrats to Jessica Lin and Nick Hathaway on their publication and Hathaway's SeekDeep image graces the cover of JID.


More importantly see the article from which it comes: 
Sujata Balasubramanian, et al.
J Infect Dis, Volume 221, Issue 3, 1 February 2020, Pages 428–437, https://doi.org/10.1093/infdis/jiz388
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